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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "cytometree" in publications use:'
type: software
license: LGPL-3.0-only
title: 'cytometree: Automated Cytometry Gating and Annotation'
version: 2.0.5
doi: 10.1002/cyto.a.23601
identifiers:
- type: doi
  value: 10.32614/CRAN.package.cytometree
- type: url
  value: https://github.com/sistm/Cytometree/
abstract: 'Given the hypothesis of a bi-modal distribution of cells for each marker,
  the algorithm constructs a binary tree, the nodes of which are subpopulations of
  cells. At each node, observed cells and markers are modeled by both a family of
  normal distributions and a family of bi-modal normal mixture distributions. Splitting
  is done according to a normalized difference of AIC between the two families. Method
  is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) <https://doi.org/
  10.1002/cyto.a.23601>.'
authors:
- family-names: Alkhassim
  given-names: Chariff
- family-names: Hejblum
  given-names: Boris P
  email: boris.hejblum@u-bordeaux.fr
- family-names: Devaux
  given-names: Anthony
- family-names: Tran
  given-names: Van Hung Huynh
- family-names: Durand
  given-names: Melany
preferred-citation:
  type: article
  title: 'cytometree: a binary tree algorithm for automatic gating in cytometry analysis'
  authors:
  - name: Daniel Commenges
  - name: Chariff Alkhassim
  - name: Raphael Gottardo
  - name: Boris P Hejblum
  - name: Rodolphe Thi\'ebaut
  journal: Cytometry Part A
  year: '2018'
  volume: '93'
  issue: '11'
  doi: 10.1002/cyto.a.23601
  url: https://doi.org/10.1002/cyto.a.23601
  notes: R package version 2.0.5
  start: '1132'
  end: '1140'
repository: https://sistm.r-universe.dev
repository-code: https://github.com/sistm/Cytometree
commit: b484bed3b52111c30e1424da9cc465e9a88dde67
url: https://sistm.github.io/cytometree/
date-released: '2022-11-08'
contact:
- family-names: Hejblum
  given-names: Boris P
  email: boris.hejblum@u-bordeaux.fr