Package: cytometree
Type: Package
Title: Automated Cytometry Gating and Annotation
Version: 2.0.6
Date: 2025-07-24
Authors@R: c(person(given = "Chariff",
             family = "Alkhassim",
             role = c("aut")),
      person(given = "Boris P",
             family = "Hejblum",
             email = "boris.hejblum@u-bordeaux.fr",
             role = c("cre", "aut")),
      person(given = "Anthony",
             family = "Devaux",
             role = c("aut")),
      person(given = "Van Hung Huynh",
             family = "Tran",
             role = c("aut")),
      person(given = "Melany",
             family = "Durand",
             role = c("aut"))
             )
Maintainer: Boris P Hejblum <boris.hejblum@u-bordeaux.fr>
LinkingTo: Rcpp, RcppArmadillo
Description: Given the hypothesis of a bi-modal distribution of cells
        for each marker, the algorithm constructs a binary tree, the
        nodes of which are subpopulations of cells. At each node,
        observed cells and markers are modeled by both a family of
        normal distributions and a family of bi-modal normal mixture
        distributions. Splitting is done according to a normalized
        difference of AIC between the two families. Method is detailed
        in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018)
        <doi: 10.1002/cyto.a.23601>.
License: LGPL-3 | file LICENSE
LazyData: true
Depends: R (>= 3.1.0), Rcpp (>= 0.12.11)
Imports: ggplot2, graphics, igraph, mclust, methods, stats, cowplot,
        GoFKernel
RoxygenNote: 7.3.2
URL: https://sistm.github.io/cytometree/,
        https://github.com/sistm/Cytometree/
BugReports: https://github.com/sistm/Cytometree/issues
Encoding: UTF-8
Suggests: knitr, formatR, rmarkdown, viridis, testthat
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://sistm.r-universe.dev
Date/Publication: 2025-07-26 23:17:03 UTC
RemoteUrl: https://github.com/sistm/cytometree
RemoteRef: HEAD
RemoteSha: 2280b5f2f5291dc5d9defb0605bb8c3066861120
NeedsCompilation: yes
Packaged: 2026-07-03 22:54:57 UTC; root
Author: Chariff Alkhassim [aut],
  Boris P Hejblum [cre, aut],
  Anthony Devaux [aut],
  Van Hung Huynh Tran [aut],
  Melany Durand [aut]